Workshop

[Workshop 06] Single cell technologies and its diversity of applications

The fast development of single cell technology is revolutionizing the field of omics study. In the past few years, plant biologists have successfully adopted single cell technology and generated multiple plant cell atlases. These datasets allow us to capture the transcriptomic diversity in different cell types and help us understand cellular heterogeneity, as well as the basis of cell identity and cell fate transitions. For this session, we would like to focus on the most recent advances in the application of single cell technologies.

Thu. Jun 8, 2023 9:00 AM - 10:00 AM Makuhari Messe 2F(Room 1)

Chair:Ao Liu(HHMI-Stanford University), Bruno Guillotin(NYU-Center of Genomics and Systems Biology)

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Opening Remarks （9:00 AM - 9:02 AM）

9:02 AM - 9:15 AM

[Workshop_06-01] Origin and diversification of the cell types of the flower

[on-site]

*Luke Nikolov¹ (1. Indiana University)

9:16 AM - 9:29 AM

[Workshop_06-02] Constructing an Arabidopsis Embryonic Expression Atlas using snRNA-seq

[on-site]

*Ping Kao¹ (1. Graduate School of Life Sciences, Tohoku University, Japan)

9:30 AM - 9:43 AM

[Workshop_06-03] Cell Cycle Dynamics During Plant Cell Reprogramming

[on-site]

*Laura Rose Lee¹, Kenneth Birnbaum¹ (1. New York University)

9:44 AM - 9:57 AM

[Workshop_06-04] Time-resolved single-cell and spatial gene regulatory atlas of plants under pathogen attack

[on-site]

*Tatsuya Nobori^1,2, Alexander Monell³, Travis A Lee^1,2, Joseph R Ecker^1,2 (1. Salk Institute, 2. HHMI, 3. UCSD)

Closing Remarks （9:57 AM - 10:00 AM）

Workshop

[Workshop 07] Watching and quantifying biochemical processes in intact plants

The understanding of signaling and metabolic processes in multicellular organisms requires knowledge of the spatial dynamics of small molecules and the activities of enzymes, transporters and other proteins in vivo, as well as biophysical parameters inside cells and across tissues. Genetically encoded sensors are engineered fluorescent proteins that have been developed for a wide range of small molecules, such as ions and metabolites, or to report biophysical processes, such as transmembrane voltage or tension.

Thu. Jun 8, 2023 9:00 AM - 10:00 AM Makuhari Messe 2F(Room 2)

Chair:Cheng-Hsun Ho(ABRC, Academia Sinica)

This session is sponsored by Agricultural Biotechnology Research Center, Academia Sinica.

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Opening Remarks （9:00 AM - 9:02 AM）

9:02 AM - 9:17 AM

[Workshop_07-01] Live show of nitrate dynamics in root nd developemt of Arabidopsis

[on-site]

*Ho Cheng-Hsun¹ (1. ABRC, Academia Sinica, Taiwan)

9:18 AM - 9:38 AM

[Workshop_07-02] Towards Soil-on-a-Chip — structured micro-environments for root science

[on-site]

Christian-Frederic Kaiser^1,2, Marjorie Guichard^1,2, Milan Župunski¹, Mayuri Sadoine¹, *Guido Grossmann^1,2 (1. Heinrich-Heine-University Duesseldorf, Institute of Cell and Interaction Biology, Germany, 2. Cluster of Excellence in Plant Sciences CEPLAS, Germany)

9:39 AM - 9:59 AM

[Workshop_07-03] CO₂ Sensing and Signaling Components are Required for Stomatal Responses to Elevated Temperatures

[on-site]

*Nattiwong Pankasem¹, Julian I. Schroeder¹ (1. Cell and Developmental Biology Department, School of Biological Sciences, University of California San Diego, La Jolla, CA 92093-0116, USA.)

Closing Remarks （9:59 AM - 10:00 AM）

Workshop

[Workshop 08] Spatiotemporal dynamics of protein and protein complexes in the cell

Recent advances in biochemistry and biophysics, plant molecular and cell biology revealed that the differential fate of proteins in cell space including transport, modification, and even aggregation leads to contrasting cellular output in abiotic and biotic defense responses and plant development. Hence, the need for the detection and visualization of protein complex dynamics in living cells has become the technology of utmost importance. This workshop aims to showcase cutting-edge technologies and findings in spatiotemporal dynamics of cellular proteins and protein complexes.

Thu. Jun 8, 2023 9:00 AM - 9:58 AM Makuhari Messe 2F(Room 3)

Chair:Hisashi Koiwa(Texas A&M University), Libo Shan(Texas A&M University), Juan Dong(Rutgers University)

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Opening Remarks （9:00 AM - 9:02 AM）

9:02 AM - 9:15 AM

[Workshop_08-01] Tandem fluorescent timer in Plants: A Tool for Acquiring Spatiotemporal Information about Proteins

[on-site]

*Yukihiro Nagashima¹, Jun Liu², Xue Ding^3,4, Juan Dong^3,4, Libo Shan^2,5, Hisashi Koiwa^1,5 (1. Vegetable and Fruit Improvement Center and Department of Horticultural Sciences, Texas A&M University, 2. Department of Biochemistry & Biophysics, Texas A&M University, 3. Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, 4. Department of Plant Biology, Rutgers, The State University of New Jersey, 5. Molecular and Environmental Plant Sciences, Texas A&M University)

9:16 AM - 9:29 AM

[Workshop_08-02] Ironing out the issues: protein dynamics in response to iron deficiency

[on-site]

*Terri A. Long¹ (1. North Carolina State University)

9:30 AM - 9:43 AM

[Workshop_08-03] Plant plasma membrane nano-organization and cell polarization

[on-site]

*Xue Pan¹ (1. Department of Biological Sciences, University of Toronto Scarborough, Toronto, Canada)

9:44 AM - 9:57 AM

[Workshop_08-04] Unraveling the molecular and cellular mechanisms underlying a MLR-NLR complex-regulated autoimmunity

[online]

*Fausto Andres Ortiz Morea^1,2, Jun Liu¹, Libo Shan¹, Ping He¹ (1. Department of Biochemistry & Biophysics, Texas A&M University, 2. Universidad de la Amazonia)

Closing Remarks （9:57 AM - 9:58 AM）

Workshop

[Workshop 09] Arabidopsis small RNA biology

This workshop will focus on newly discovered roles of small RNAs, highlighting two hot areas of research in the field: 1) The function of small RNAs that are generated only in very specific reproductive cells, and 2) The role of small RNA warfare during the Arabidopsis-pathogen/pest interaction.

Thu. Jun 8, 2023 9:00 AM - 10:00 AM Makuhari Messe 2F(Room 4)

Chair:Keith Slotkin(Donald Danforth Plant Science Center & University of Missouri)

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Opening Remarks （9:00 AM - 9:01 AM）

9:01 AM - 9:12 AM

[Workshop_09-01] Mating system influences the requirement for RdDM during reproduction in Brassicaceae

[on-site]

Kelly A Dew-Budd¹, Hiu-Tung Chow¹, Timmy Kendall¹, Mark A Beilstein¹, *Rebecca A Mosher¹ (1. The School of Plant Sciences, The University of Arizona, Tucson, AZ 85721, USA)

9:13 AM - 9:24 AM

[Workshop_09-02] Interspecies regulatory small RNAs in plant-parasite interactions

[on-site]

Allison Zvarick¹, Elizabeth Brandt², Zoe Hester², *Saima Shahid² (1. The Pennsylvania State University, USA, 2. Oklahoma State University, USA)

9:25 AM - 9:36 AM

[Workshop_09-03] Translation-dependent epigenetic silencing of transposon

[on-site]

*Jungnam Cho^1,2 (1. CAS Center for Excellence in Molecular Plant Sciences, China, 2. CAS-JIC Centre of Excellence for Plant and Microbial Science, China)

9:37 AM - 9:48 AM

[Workshop_09-04] Reproductive barriers established by epigenetic mechanisms in the endosperm

[on-site]

*Claudia Köhler^1,2, Katarzyna Dziasek^1,2, Juan Santos-González^1,2 (1. Max Planck Institute of Molecular Plant Physiology, 2. Swedish University of Agricultural Sciences)

9:49 AM - 10:00 AM

[Workshop_09-05] Regulating Pol-IV to generate epigenetic diversity

[on-site]

*Julie Ann Law¹ (1. Salk Institute for Biological Studies)

Workshop

[Workshop 10] Arabidopsis bioinformatics

This workshop will feature updates and introductions of online resources that are part of the Arabidopsis scientist’s modern research toolkit, just like laboratory equipment, enzymes, and buffers. Essential resources like TAIR and BAR will be revisited in addition to highlighting resources created and maintained by community members in the Asia Pacific region that are of global importance.

Thu. Jun 8, 2023 9:00 AM - 10:00 AM Makuhari Messe 3F(Room 5)

Chair:Nicholas Provart(University of Toronto), Tanya Berardini(Phoenix Bioinformatics)

This session is sponsored by RIKEN CSRS.

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Welcome （9:00 AM - 9:02 AM）

9:02 AM - 9:14 AM

[Workshop_10-01] Updates to the Bio-Analytic Resource

[on-site]

*Nicholas J Provart^1,2 (1. University of Toronto, 2. Centre for the Analysis of Genome Evolution and Function)

9:15 AM - 9:27 AM

[Workshop_10-02] To integrate or not to integrate: how to collaborate with conversational AI programs

[on-site]

*Masanori Arita¹ (1. RIKEN Center for Sustainable Resource Science)

9:28 AM - 9:40 AM

[Workshop_10-03] Complete sequence assembly of Arabidopsis ribosomal DNA (rDNA) arrays provides insight into rDNA variation, epigenetic regulation and large scale recombination

[on-site]

*Ramya Enganti^1,2, Dalen Fultz^1,2, Anastasia McKinlay^1,2, Craig Pikaard^1,2 (1. Howard Hughes Medical Institute, 2. Indiana University)

9:41 AM - 9:53 AM

[Workshop_10-04] The 2023 TAIR update: From basics to the progress with the community-developed v12 of the genome

[on-site]

*Tanya Z Berardini¹, Leonore Reiser¹, Shabari Subramaniam¹, Erica Bakker¹, Xingguo Chen¹, Swapnil Sawant¹, Trilok Prithvi¹ (1. The Arabidopsis Information Resource/Phoenix Bioinformatics)

Discussion/Q&A/Question for all speakers （9:53 AM - 10:00 AM）

Sessions

Workshop » Workshop 06-10

[Workshop 06] Single cell technologies and its diversity of applications

[on-site]

[on-site]

[on-site]

[on-site]

[Workshop 07] Watching and quantifying biochemical processes in intact plants

[on-site]

[on-site]

[on-site]

[Workshop 08] Spatiotemporal dynamics of protein and protein complexes in the cell

[on-site]

[on-site]

[on-site]

[online]

[Workshop 09] Arabidopsis small RNA biology

This workshop will focus on newly discovered roles of small RNAs, highlighting two hot areas of research in the field: 1) The function of small RNAs that are generated only in very specific reproductive cells, and 2) The role of small RNA warfare during the Arabidopsis-pathogen/pest interaction.

[on-site]

[on-site]

[on-site]

[on-site]

[on-site]

[Workshop 10] Arabidopsis bioinformatics

[on-site]

[on-site]

[on-site]

[on-site]

Authentication