Assembling and Annotating Arabidopsis Genomes to Model Protein Abundance

Richard Mott

Presentation information

Workshop

Workshop » Workshop 01-04

[Workshop 02] Coordinating and utilizing the rapidly growing collection of independently assembled Arabidopsis genomes

Advances in long-read sequencing technology have made it possible to complement the Arabidopsis reference genome with hundreds of independently assembled genomes. For these data to be useful to the community they need to be integrated with previously existing resources from the 1001 Genomes Project. We will discuss how this can be accomplished, and what we can learn from complete genome information on species-wide scale.

Mon. Jun 5, 2023 2:00 PM - 3:00 PM Makuhari Messe 2F(Room 4)

Chair:Magnus Nordborg(Gregor Mendel Institute, Austrian Academy of Sciences), Detlef Weigel(Max Planck Institute for Biology, Tübingen)

2:21 PM - 2:30 PM

[Workshop_02-03] Assembling and Annotating Arabidopsis Genomes to Model Protein Abundance

[on-site]

*Richard Mott¹, Mark Bailey², Ziming Zhong¹, Yong-In Kim³, Bryony Parker², Robert King², Gancho Slavov⁴, Kirsty Hassell², Keywan Hassani-Pak², Kathryn Lilley³, Frederica Theodoulou², Nazanin Pesaran Afsharyan² (1. University College London, 2. Rothamsted Research, 3. University of Cambridge, 4. Forest Genetics and Biotechnology, Scion Research, NZ)

Keywords:Database/software/bioinformatics, Genomics, Natural variation, Transcription/translation, Genetics/epigenetics