Workshop

[Workshop 01] Integration of engineering, plant sciences, and agricultural research for translational research

This workshop focuses on the integration of engineering and biology for plant improvement. Networks of scientists that conduct basic and applied research are critical for advancing this field. The workshop aims to cover data acquisition, data intergration,and data mining while promoting knowledge transfer and skill sharing. Biotech-enabled plant advances incorporating whole-plant structure and physiology will be essential to solve global agriculture problems.

Mon. Jun 5, 2023 2:00 PM - 3:00 PM Makuhari Messe 2F(Room 3)

Chair:Ross Sozzani(NCSU), Lucia Strader(Duke)

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Opening Remarks （2:00 PM - 2:03 PM）

2:03 PM - 2:18 PM

[Workshop_01-01] Integrating Engineering, Plant Sciences, and Agricultural Research for Translational Research: An Introduction to the Workshop and Case Study Presentation

[on-site]

*Ross Sozzani¹ (1. North Carolina State University)

2:19 PM - 2:34 PM

[Workshop_01-02] Multi-scale modeling approaches for understanding plant and agronomic systems across biological scales

[on-site]

*Cranos Williams¹ (1. North Carolina State University)

2:35 PM - 2:50 PM

[Workshop_01-03] The nexus of plant peptide-receptor modules and environmental adaptation

[on-site]

*Akie Shimotohno¹ (1. Nagoya University, Japan)

Closing Remarks （2:50 PM - 3:00 PM）

Workshop

[Workshop 02] Coordinating and utilizing the rapidly growing collection of independently assembled Arabidopsis genomes

Advances in long-read sequencing technology have made it possible to complement the Arabidopsis reference genome with hundreds of independently assembled genomes. For these data to be useful to the community they need to be integrated with previously existing resources from the 1001 Genomes Project. We will discuss how this can be accomplished, and what we can learn from complete genome information on species-wide scale.

Mon. Jun 5, 2023 2:00 PM - 3:00 PM Makuhari Messe 2F(Room 4)

Chair:Magnus Nordborg(Gregor Mendel Institute, Austrian Academy of Sciences), Detlef Weigel(Max Planck Institute for Biology, Tübingen)

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Opening Remarks （2:00 PM - 2:01 PM）

2:01 PM - 2:10 PM

[Workshop_02-01] Rapid cycles of satellite homogenization and retrotransposon invasion drive Arabidopsis pancentromere evolution

[on-site]

*Ian Henderson¹, Piotr Wlodzimierz¹, Fernando Rabanal², Robin Burns¹, Matthew Naish¹, Elias Primetis³, Alison Scott⁴, Terezie Mandakova⁵, Nicola Gorringe¹, Andrew Tock¹, Max Collenberg², Miriam Mielke², Gautam Shirsekar², Carlos Alonso-Blanco⁸, Fabrice Roux⁷, Martin Lysak⁵, Polina Novikova⁴, Magnus Nordborg⁶, Alexandros Bousios³, Detlef Weigel² (1. Department of Plant Sciences, University of Cambridge, 2. Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany, 3. School of Life Sciences, University of Sussex, Brighton, United Kingdom, 4. Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Cologne, Germany, 5. Central European Institute of Technology, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic, 6. Gregor Mendel Institute, Vienna, Austrian Academy of Sciences, Vienna BioCenter, Dr. Bohr-Gasse 3, 1030, Vienna, Austria, 7. LIPME, INRAE, CNRS, Université de Toulouse, Castanet-Tolosan, France, 8. Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Madrid, Spain)

2:11 PM - 2:20 PM

[Workshop_02-02] The pan-genome and local adaptation of Arabidopsis thaliana

[on-site]

*Jianquan Liu^1,2, Minghui Kang^1,2, Haolin Wu², Wenyu Liu¹, Mingjia Zhu¹, Yu Han², Wei Liu², Chunlin Chen², Kangqun Yin², Yusen Zhao², Zhen Yan², Huanhuan Liu², Shangling Lou^1,2, Yanjun Zan³ (1. State Key Laboratory of Grassland Agro-ecosystem, College of Ecology, Lanzhou University, Lanzhou, 730000, China, 2. Key Laboratory of Bio-resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China, 3. Key Laboratory of Tobacco Improvement and Biotechnology, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266000, China)

2:21 PM - 2:30 PM

[Workshop_02-03] Assembling and Annotating Arabidopsis Genomes to Model Protein Abundance

[on-site]

*Richard Mott¹, Mark Bailey², Ziming Zhong¹, Yong-In Kim³, Bryony Parker², Robert King², Gancho Slavov⁴, Kirsty Hassell², Keywan Hassani-Pak², Kathryn Lilley³, Frederica Theodoulou², Nazanin Pesaran Afsharyan² (1. University College London, 2. Rothamsted Research, 3. University of Cambridge, 4. Forest Genetics and Biotechnology, Scion Research, NZ)

2:31 PM - 2:40 PM

[Workshop_02-04] The Actual Mobilome of Arabidopsis thaliana

[on-site]

*Anna Igolkina¹, Magnus Nordborg¹ (1. GMI - Gregor Mendel Institute of Molecular Plant Biology)

2:41 PM - 2:50 PM

[Workshop_02-05] Benchmarking graph building pipeline on plant genome assemblies

[on-site]

*Zhigui Bao^1,2, Sebastian Vorbrugg¹, Sanwen Huang², Detlef Weigel¹ (1. Max Planck Institute for Biology Tübingen, 2. Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences)

2:51 PM - 3:00 PM

[Workshop_02-06] Challenges of annotating complex genes in the Arabidopsis long read genome collection

[on-site]

*Luisa Teasdale¹, Gautam Shirsekar¹, Max Collenberg¹, Kevin Murray¹, Adrian Contreras-Garrido¹, Leon Van Ess¹, Justina Juettner¹, Christa Lanz¹, Joffrey Fitz¹, Hajk-Georg Drost¹, Detlef Weigel¹ (1. Max Planck Institute - Department of Biology)

Workshop

[Workshop 03] Systems biology of plant-microbes interactions

A systems perspective on mechanisms of pathogen infection and plants’ responses to such biotic stresses can lead to significant advances in plant biology and agriculture in general. This session will highlight exciting new discoveries being made in plant-pathogen interactions by leveraging functional genomics and systems biology approaches in the model system Arabidopsis and agronomically important crop plants. We will seek topics pertinent to plant receptor networks to perceive diverse pathogens, transcriptional gene regulatory networks at different scales (e.g. tissue/single cell), mechanisms of pathogen manipulation of host plants, and systemic outcomes of infection.

Mon. Jun 5, 2023 2:00 PM - 3:00 PM Makuhari Messe 3F(Room 5)

Chair:Shahid Mukhtar(University of Alabama at Birmingham)

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Opening Remarks （2:00 PM - 2:02 PM）

2:02 PM - 2:15 PM

[Workshop_03-01] Spatial and systems biology of plant-microbe interactions

[on-site]

*Shahid M Mukhtar¹ (1. University of Alabama at Birmingham)

2:16 PM - 2:29 PM

[Workshop_03-02] MAMP and DAMP signalling contributes resistance to Fusarium graminearum in Arabidopsis

[on-site]

*Gopal Subramaniam^1,2, Maryam Nourimand¹, Nimrat Manes¹, Elizabeth Brauer¹ (1. Agriculture and Agri-Food Canada, Canada, 2. Carleton University, Canada)

2:30 PM - 2:43 PM

[Workshop_03-03] Attraction of Herbivores for Survival from Virulent Pathogens in Arabidopsis

[on-site]

*Kazuha Mori¹, Mika Nomoto^1,2, Liu Zhang³, Hiroshi Mori¹, Shinya Ariyasu⁴, Susumu Uehara^1,2, Osami Shoji ⁴, Akiko Maruyama³, Yasuomi Tada^1,2 (1. Department of Biological Science, Graduate School of Science, Nagoya University, Japan, 2. Center for Gene Research, Nagoya University, Japan, 3. Department of Bioscience and Biotechnology Faculty of Agriculture, Kyushu University, Japan, 4. Department of Chemistry, Graduate School of Science, Nagoya University, Japan)

2:44 PM - 2:57 PM

[Workshop_03-04] Functional or NAT? RNA control of receptor expression

[on-site]

Hemal Bhasin¹, Hasna Khan¹, *Adam Mott¹ (1. University of Toronto - Scarborough)

Closing Remarks （2:57 PM - 3:00 PM）

Workshop

[Workshop 04] Molecular dialogues in reproductive development

The workshop will cover different aspects of molecular dialogues controling reproduction in plants.

Mon. Jun 5, 2023 2:00 PM - 3:00 PM Makuhari Messe 3F(Room 6)

Chair:Julia Santiago(University of Lausanne), Tetsuya Higashiyama(University of Tokyo, Japan)

This session is sponsored by MEXT Grants-in-Aid for Scientific Research (KAKENHI), Innovative Plant Reproductive Systems and JSPS Grants-in-Aid for Scientific Research (KAKENHI), International Leading Research "Key-Molecule-Network in Plant Reproduction".

　　　　

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Opening Remarks （2:00 PM - 2:01 PM）

2:01 PM - 2:19 PM

[Workshop_04-01] Cell wall recognition and patterning by a sensor complex coordinates cell wall architecture and drives pollen tube expansion.

[on-site]

*Julia Santiago¹, Steven Moussu¹, Hyung Kyung Lee¹, Kalina Haas², Caroline Broyart¹, Ursina Rathgeb¹, Estelle Bonnin³, Niko Geldner¹, Bernard Catala³, Herman Hofte² (1. University of Lausanne, 2. Institut Jean-Pierre Bourgin (IJPB), 3. INRAE, Nantes)

2:20 PM - 2:38 PM

[Workshop_04-02] Turning up the volume on intercellular communication during pollen tube reception.

[on-site]

*Sharon Kessler¹, Sienna Ogawa¹, Yan Ju¹ (1. Purdue University)

2:39 PM - 2:57 PM

[Workshop_04-03] Multiple roles of aspartic endopeptidases ECS1 and ECS2 in fertilization

[on-site]

*Meng-xiang Sun¹, Xuecheng Zhang¹, Ce Shi¹, Tianhe Cheng¹, Wei Wang¹, Xiaorong Huang¹ (1. Wuhan University, China)

Closing Remarks （2:57 PM - 3:00 PM）

Sessions

Workshop » Workshop 01-04

[Workshop 01] Integration of engineering, plant sciences, and agricultural research for translational research

[Workshop_01-01] Integrating Engineering, Plant Sciences, and Agricultural Research for Translational Research: An Introduction to the Workshop and Case Study Presentation

[on-site]

[Workshop_01-02] Multi-scale modeling approaches for understanding plant and agronomic systems across biological scales

[on-site]

[Workshop_01-03] The nexus of plant peptide-receptor modules and environmental adaptation

[on-site]

[Workshop 02] Coordinating and utilizing the rapidly growing collection of independently assembled Arabidopsis genomes

[Workshop_02-01] Rapid cycles of satellite homogenization and retrotransposon invasion drive Arabidopsis pancentromere evolution

[on-site]

[Workshop_02-02] The pan-genome and local adaptation of Arabidopsis thaliana

[on-site]

[Workshop_02-03] Assembling and Annotating Arabidopsis Genomes to Model Protein Abundance

[on-site]

[Workshop_02-04] The Actual Mobilome of Arabidopsis thaliana

[on-site]

[Workshop_02-05] Benchmarking graph building pipeline on plant genome assemblies

[on-site]

[Workshop_02-06] Challenges of annotating complex genes in the Arabidopsis long read genome collection

[on-site]

[Workshop 03] Systems biology of plant-microbes interactions

[Workshop_03-01] Spatial and systems biology of plant-microbe interactions

[on-site]

[Workshop_03-02] MAMP and DAMP signalling contributes resistance to Fusarium graminearum in Arabidopsis

[on-site]

[Workshop_03-03] Attraction of Herbivores for Survival from Virulent Pathogens in Arabidopsis

[on-site]

[Workshop_03-04] Functional or NAT? RNA control of receptor expression

[on-site]

[Workshop 04] Molecular dialogues in reproductive development

The workshop will cover different aspects of molecular dialogues controling reproduction in plants.

[Workshop_04-01] Cell wall recognition and patterning by a sensor complex coordinates cell wall architecture and drives pollen tube expansion.

[on-site]

[Workshop_04-02] Turning up the volume on intercellular communication during pollen tube reception.

[on-site]

[Workshop_04-03] Multiple roles of aspartic endopeptidases ECS1 and ECS2 in fertilization

[on-site]

Authentication