Benchmarking graph building pipeline on plant genome assemblies

Zhigui Bao

Presentation information

Workshop

Workshop » Workshop 01-04

[Workshop 02] Coordinating and utilizing the rapidly growing collection of independently assembled Arabidopsis genomes

Advances in long-read sequencing technology have made it possible to complement the Arabidopsis reference genome with hundreds of independently assembled genomes. For these data to be useful to the community they need to be integrated with previously existing resources from the 1001 Genomes Project. We will discuss how this can be accomplished, and what we can learn from complete genome information on species-wide scale.

Mon. Jun 5, 2023 2:00 PM - 3:00 PM Makuhari Messe 2F(Room 4)

Chair:Magnus Nordborg(Gregor Mendel Institute, Austrian Academy of Sciences), Detlef Weigel(Max Planck Institute for Biology, Tübingen)

2:41 PM - 2:50 PM

[Workshop_02-05] Benchmarking graph building pipeline on plant genome assemblies

[on-site]

*Zhigui Bao^1,2, Sebastian Vorbrugg¹, Sanwen Huang², Detlef Weigel¹ (1. Max Planck Institute for Biology Tübingen, 2. Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences)

Keywords:Genetics, Natural variation, Genomics, Database/software/bioinformatics

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